Consistent Unresponsive Apps And System Bugginess?

I've had a few problems for the past 2-3 weeks-ish and i can't find any solutions, the problem consists of whenever i get into the operating system to the desktop it will load in increments ill set there for a little while and say for example my drivers that make my mouse run and say core temp at start-up wont launch for about 30 seconds but when they do they launch together it also doesn't load any of my removable drives during this time either. I've had general slowness of windows.exe when i go into documents it takes 5-7 seconds to load you can see the bar up at the top moving along like grandma on a walker. Steam has also been affected quite terribly it goes unresponsive when i try to download or do anything really in fact i can't launch it right now it just won't after i sign in it connects then goes unresponsive and closes. My mother board logo at the beginning of turning on my PC also has been slowed takes 20-30 seconds now used to take 3-5 no bios options have been changed for the logo.I'm running my OS on a crucial M4 64gb with the firmware update i believe ill have to check and all my apps are on a 1tb WD black Space wise the SSD is at 9 gigs free and the HDD is at 300gigs free

My system consists of:

mobo: x79 sabertooth
CPU: I7 3820 @ 4.3ghz 1.210v VTT@auto
mem: G.skill 16gb [4x4] 1600mhz 11-11-11-24-1 volts on auto
GPU: GTX 680 reference @ stock clocks & volts
Storage: Crucial M4 64gb for OS and small apps, WD BLACK 1TB for games & big apps, and Seagate something 1tb 7200rpm for backup
PSU: Corsair AX850W sexiness
OS: Windows 7 Ultimate 64bit

I've checked all plugins and everything is fine i built the system in march and this problem is new i suspect the motherboard bios which i have stock its a rev 0906 i believe but i'm not too sure ill update it here in a bit along with the SSD.I use Microsoft Security Essentials for security and i have ran full system scans with that and malwarebytes i run CCleaner every week and so fourth.