Automatic Scan On A Daily Basis

I have both my windows defender and my anti-virus program set to automatically scan my computer at 2 am on a daily basis. I usually put my computer into hibernation when I am done working on it and for some reason it doesn't seem like either one of these programs is doing what it should be doing. If I actually do a complete shutdown on my computer then after I restart it it tells me that my computer hasn't been scanned in x amount of days. I thought I had everything set up correctly but I guess I may be missing something. I have never had an issue like this. Every other computer I have had things worked and scanned just fine like they were set up to do.